rs30623449 SNP Detail

Summary

• ID
  rs30623449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129475526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCCAGGT AATTACGACC GCTAGTGAGT ATGGGTAACT
  ACTATCTTGC AGGGATCCCC AAGCTGTTCT TTCATAGGTG GCAGCTCAGA AGGCAGAGTG
  Y
  TGAGAGAGGC CCAGATAAGC ACAACAGCAC TTCTCTTTAC TCAACAAACC ATTTTTGTCA
  TTGTTTGCAT GGTTCAGACT CACGGCACAC TTGCAATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45472762	mCV25348725	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss46966615	NES10893237	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T		C	T	C	T	C	C	C	C	C
ss135887725	ENSMUSSNP665058	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30623449					SNP	C	C	C	C	C	T	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966615	NES10893237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129475526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			1630 bp distal
Rr585060	regulatory region 585060			1096 bp distal
Rr585061	regulatory region 585061			412 bp distal
Rr585062	regulatory region 585062			within coordinates
Rr585063	regulatory region 585063			570 bp proximal
Rr585064	regulatory region 585064			1582 bp proximal
Tssr35620	transcription start site region 35620			1408 bp downstream