rs30623447 SNP Detail

Summary

• ID
  rs30623447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129475483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGCTGC AAATTATACA
  AGTGTCCTTA GGTATCACCA GTACTTGCCC ATCAGCCAGG CCATATATGT GGGTTTGGGC
  TACCGCTGTT TGTGTGTATG TGTGTGTATG TGTCTATATA TAATTCATTT AAGCATGCTA
  TCAAGTCCCA GGTAATTACG ACCGCTAGTG AGTATGGGTA ACTACTATCT TGCAGGGATC
  Y
  CCAAGCTGTT CTTTCATAGG TGGCAGCTCA GAAGGCAGAG TGCTGAGAGA GGCCCAGATA
  AGCACAACAG CACTTCTCTT TACTCAACAA ACCATTTTTG TCATTGTTTG CATGGTTCAG
  ACTCACGGCA CACTTGCAAT GCAGGCTGAG CAGAGCCGAC TGGCCTGCAC TCAGGCCAGA
  CAGGTTAGGT ATTAAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46966613	NES10893236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30623447					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966613	NES10893236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129475483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			1587 bp distal
Rr585060	regulatory region 585060			1053 bp distal
Rr585061	regulatory region 585061			369 bp distal
Rr585062	regulatory region 585062			2 bp proximal
Rr585063	regulatory region 585063			613 bp proximal
Rr585064	regulatory region 585064			1625 bp proximal
Tssr35620	transcription start site region 35620			1451 bp downstream