rs30622999 SNP Detail

Summary

• ID
  rs30622999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88741046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA GTGTTACAGT CATAGACCAC
  Y
  CTGCCTAAAA AGTGTATTTT TTAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46426656	mCV22842381	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30622999					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88741046 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	1192 bp upstream
Gm64348	predicted gene, 64348	250 bp downstream
Gon4l	gon-4 like	1485 bp upstream
Rr375322	regulatory region 375322	1647 bp downstream
Rr375323	regulatory region 375323	1215 bp upstream
Rr397779	regulatory region 397779	935 bp downstream
Rr579902	regulatory region 579902	1264 bp distal
Rr579904	regulatory region 579904	600 bp distal
Rr579905	regulatory region 579905	837 bp proximal
Rr579906	regulatory region 579906	976 bp proximal
Rr579907	regulatory region 579907	1402 bp proximal
Rr579908	regulatory region 579908	1418 bp proximal
Rr579909	regulatory region 579909	1503 bp proximal
Tssr34067	transcription start site region 34067	1168 bp upstream