rs30622929 SNP Detail

Summary

• ID
  rs30622929
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132790739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCATTCACA GTATGATAGT AAAAACAAAG TTACAGACGT
  GTGGAGAGGA AAGATGCAGC CTTCTGTTTG GTGAGAGTAC TCCAGGTACA GAGATTCCTC
  S
  GTAGGACTTT TCTTAATGCC TTTCATCTTC TGTTGTCATT GGGTCACCTA GAACAAAGAT
  CAATATGGTT ATAGGCCTTC AAGCGCAACA ATTTAGAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45449039	mCV25027755	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30622929					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132790739 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstcd	glutathione S-transferase, C-terminal domain containing			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr398027	regulatory region 398027			950 bp upstream
Rr585498	regulatory region 585498			961 bp proximal
Rr585499	regulatory region 585499			1067 bp proximal