rs30622811 SNP Detail

Summary

• ID
  rs30622811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129488218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATTCACC AGACCACACC
  ATCCATCACA TGGGGCGTAG CCCCAAGAGC TGTGGGGAAG GAGGCTCCTG TGACCTGAGC
  CGCCCTGTCT GTGCACTGTG TGGTTTCTCT GCTCACACGC AGCCTGTACT CAGCACTGCT
  TCCCACCACT TCACAGATCC ACGACTTGCT CATACCTGGA TGCTCCCTGC CCCTTCACAT
  Y
  TCTGTTTAAT TAATATGGAT TCATTCTCTA CAGTCCCACC CAAATGACAC TTCCTTTAGG
  AAACCTTGCC CAAGGCCTCA AGCAGACATT CCCCCCAGTT CTTGGCTTTG TTGTGTTTCT
  GCTCCTCATG CCGCACATCT GCCTGTGTTT CTCTCTTATC AAAGCTGCCT TTCTCCCAGA
  CCATGGTCTA TTGGTCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46966801	NES10893161	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30622811					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966801	NES10893161	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129488218 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585067	regulatory region 585067			1537 bp distal
Rr585068	regulatory region 585068			624 bp distal