rs30622776 SNP Detail

Summary

• ID
  rs30622776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTCCAAA CCCAAGGGAC AGATCACAGT ACAAGTCCTG
  GCAGAGGGAC CACAGCAAAG GACGCAGAGT ACGCTCCAGG GGAGCTTGAG AACTTGGCTC
  R
  GATCTATGGT CCCTTAGTGG TCTGACTGGA CTTCTCAGCC TAGAGCCTGG CTGAGGGTTA
  GCTCCCGGTA AGACTAGAAT ATGCTGAAAT CCCTAGAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46966601	NES10893268	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	A	G	A	G	G	G	G	G
ss135887665	ENSMUSSNP5962570	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30622776					SNP	G	G	G	G	G	G	A	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966601	NES10893268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474176 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			280 bp distal
Rr585060	regulatory region 585060			within coordinates
Rr585061	regulatory region 585061			917 bp proximal
Rr585062	regulatory region 585062			1309 bp proximal
Rr585063	regulatory region 585063			1920 bp proximal