rs30622774 SNP Detail

Summary

• ID
  rs30622774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129474039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTCTGT AGTAAGACCC
  CAGGTTCTCC CTACTGGAAA CCGGAAGAGG GTATTATGGC GGTGTGTGTG ATGGGAACTA
  TCAGGAAATA CAAGTAGCAC TGACACTTAG CCGGCTCCTG GCACTAGCAG GGAACCTGTT
  TTTATTGGCT CAAAGATTTC CTTTGCCTTC CCAATGGCTT AGGACACAAA GCATGTTCAG
  Y
  GCTGCCCTCT GGGCTGTAAG GAGGATAATG ATATCTGAGC TCCAAACCCA AGGGACAGAT
  CACAGTACAA GTCCTGGCAG AGGGACCACA GCAAAGGACG CAGAGTACGC TCCAGGGGAG
  CTTGAGAACT TGGCTCGGAT CTATGGTCCC TTAGTGGTCT GACTGGACTT CTCAGCCTAG
  AGCCTGGCTG AGGGTTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46966599	NES10893267	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30622774					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966599	NES10893267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129474039 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			143 bp distal
Rr585060	regulatory region 585060			within coordinates
Rr585061	regulatory region 585061			1054 bp proximal
Rr585062	regulatory region 585062			1446 bp proximal
Tssr35619	transcription start site region 35619			1945 bp upstream