rs30622598 SNP Detail

Summary

• ID
  rs30622598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153441831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGCCCC ACATCCCACT
  TGAATGTGCC ACCCTCTCTC AGCATGGCCC CTGTAAATCA GTGTACTGTG TTCCGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT CTGGCACTGA
  GTTCTGATGT GAGCCACCCA ATAACTACTC TCCATCCCCT TTGGGGTGAG CATCTTCCTT
  Y
  TCTCAGGCAG CTCTCATCTG CAGCCGTAGG GACAGAGTGA CTTCACTGAA CGTGTGTGAT
  GTGTTGTGGG GTCAGCTGAA GGGCAGTTTC TAGGAAGCAG GTCTATTCAA AAGACAAGCC
  AATGTTGGCA TCGACTGGGG ACACGCTAAA ATGCATCTGA GAGGGAACTC CCACAGGATC
  CTCAGTGCCA GAGATGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45563242	mCV23504357	ABI	CRAMUS_MOUSE	f	SNP	T	C						C
ss47467000	NES10327893	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30622598					SNP	T	C	C	C	T	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467000	NES10327893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153441831 () rs orientation: forward

Symbol	Name	Function Class
Rr587744	regulatory region 587744	1750 bp distal
Rr587745	regulatory region 587745	636 bp proximal