rs30621124 SNP Detail

Summary

• ID
  rs30621124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129486960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCGTAT AGAAGGTTTC
  TTCACCTGTG TGGTGCTTCA TGTTCAGGGC CCTATGCATG CTGGGGGGGG GGGGGGCTGT
  CATGAATGCT AGAAATAAAA GATTGCTAGG TCCATGGCTG CACACCTATT GCTGGACTCC
  CGGGCTCCTG AAAGGCTTTC TTTTCACTTG TAAGGAAAGA CATCGAGACT TCTCCAGACC
  R
  AAGATCGGTA AAGCACCTCC AGCAAATGGC ATTTTATATC CTAAAACTCG GACTTCACTT
  TTGCAACTAG AAGCTTATTC ATTGACATAA ATGGCATGTC AGGACAGGCA TGGCAGTGCA
  CGCCTTTAAT CCCAGCACTA GGGAGAGAAA GGCAAACAGA TCTCTGAGTT TGAGGCCAGC
  CTGGTCTGCA GAGTGAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46966771	NES10893176	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30621124					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966771	NES10893176	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129486960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585067	regulatory region 585067			279 bp distal
Rr585068	regulatory region 585068			338 bp proximal