rs30621107 SNP Detail

Summary

• ID
  rs30621107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153442335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATGACA GCCACGACAC
  ACTGTCTAGT GAGATGCCCC TGGACCCTTG CAAAGATTTC TTTCAGCTCT GTCCTTCAGA
  AAGATAAGCC CAGATACCCC CCTGTGTTCG AGATATTCCA AACCCCAAGC TGACTGGACC
  AATAATCTGT CTCTTAATAT GAAATGCAAG TGGTGTGGCA GAATGGGGAT GAGAACAACG
  Y
  GCAGAAGAAT TGAAGTGTGA ACCCCAGTGC CTCTCTATTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCGT GGGTTACTGC CTCAAGGCCT CCCTTTCATC
  ACCAAACAAA ACCCAGTTCC TTTAATGTTC ACATTCCCTG GGGCGTCTGT TGCTCACCCT
  CACCATCCTC GAAGTCGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47466979	NES10327912	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss136111962	ENSMUSSNP6398197	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30621107					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47466979	NES10327912	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153442335 () rs orientation: forward

Symbol	Name	Function Class
Rr587745	regulatory region 587745	132 bp proximal