rs30620943 SNP Detail

Summary

• ID
  rs30620943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102112887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTTAGTCGT CATAGAATCC
  R
  TGCCCAGAAT GACAGATCTA TAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46424980	mCV22785397	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss135554867	ENSMUSSNP2979226	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320854838	CHEV_3_102009494	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30620943					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102112887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13625	CpG island 13625	558 bp distal
Gm16160	predicted gene 16160	within coordinates
Rr582207	regulatory region 582207	1619 bp distal
Rr582208	regulatory region 582208	1516 bp distal
Rr582209	regulatory region 582209	889 bp distal
Rr582210	regulatory region 582210	388 bp distal
Tssr34830	transcription start site region 34830	924 bp upstream
Vangl1	VANGL planar cell polarity 1	878 bp upstream