rs30620601 SNP Detail

Summary

• ID
  rs30620601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153363647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGGAC AGAGTGGAGT
  TCCAATCCTC AGCAGGGTCT GCTGCTGCAA GGATTGCTGG TCCGGAACAC ACCCTCTCTG
  GTCTTCTGTC CCACTCCTCT CTATACAGTT TTCTGGTACT ATCGCCCACA GCAGGCTCTT
  GAACTAGAAT CCTTTGGAAG AAATCCAGAT TGAAATAGAG ACAGCATGGC TTTCTAGCAA
  Y
  CCACTCTGTA ACACAAGAAC TAGTTCATTT CTGTCCAGAG CTGACCCCAA AGCAACCTTA
  GGGGGAAAGC CTCATTTTAA TACGGCTCTG AAGCTCTGGC TGATTCCTGG TGGCTCTCAG
  CGATGAAAAG TGACACTACT CTGTCACCTG CTCTGTGTGC TAGGGACCAC TAGTGCCACT
  TCTCTCTTAG AAAGGGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47467663	NES10329127	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T	T	T	T	T	T
ss136110519	ENSMUSSNP6074018	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30620601					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467663	NES10329127	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153363647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			162 bp proximal
Rr587720	regulatory region 587720			562 bp proximal
Rr587721	regulatory region 587721			1661 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant