rs30620598 SNP Detail

Summary

• ID
  rs30620598
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153363811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGATTGAA ATAGAGACAG
  CATGGCTTTC TAGCAATCCA CTCTGTAACA CAAGAACTAG TTCATTTCTG TCCAGAGCTG
  ACCCCAAAGC AACCTTAGGG GGAAAGCCTC ATTTTAATAC GGCTCTGAAG CTCTGGCTGA
  TTCCTGGTGG CTCTCAGCGA TGAAAAGTGA CACTACTCTG TCACCTGCTC TGTGTGCTAG
  S
  GACCACTAGT GCCACTTCTC TCTTAGAAAG GGCCAAAGGC TAATGTCATG AGAAAGCAGG
  CCAAGTCCAA GGTGGCTGAC GCAGGCCTTT GAACCTGCGC TTTCACAGTC CACGGACCTG
  AAATGTCAGT GCTCCCTGAC AGTGGTGCTA AGGGAACAAC TGCTCGACCA ACTTCGATTA
  TCTCTGGTAA AAAGAAGCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467660	NES10329128	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G	G	G	G	G	G	G	G	G
ss136110531	ENSMUSSNP6137868	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30620598					SNP	C	C	G	G	G	C	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467660	NES10329128	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153363811 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			within coordinates
Rr587720	regulatory region 587720			398 bp proximal
Rr587721	regulatory region 587721			1497 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant