rs30620583 SNP Detail

Summary

• ID
  rs30620583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153395817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGTGTGAT GTGGGACATG
  CTCAGTTACT GTCCATTTCC CCCAGTGGAA ATTTACCTTA ATAATTTGTT AGCAGGGGAA
  ATAGTAGAAG TGCAGTCAAC ACGATCCCTT CCTAAACCTA TGCTGGAAAG ATCAACTCCT
  CAGCCCTCCC CTGCGCATTC CGACTCCACA ACCCAACTCA CAGAGTAGCT GCCACTTATC
  Y
  GCTTTCTCCA GCAGCTCCTA CGTGACTCAC GAGGGATGGC CCCTCTGCAA GTATGCCTGC
  AAGCCCTGGC TCTGCACAGT ACCCTAGCAG GCAGAGGGTG CTGGGAGCAA GCAAGTCAGG
  TTGGCCTGAG AACTGACCCA CTAGGTCAGA GGAAGCACCT CAAGATACGA CAGAGTGGAT
  AAGGACACAG CCAAATGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467267	NES10328623	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30620583					SNP	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467267	NES10328623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153395817 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587732	regulatory region 587732			630 bp proximal
Rr587733	regulatory region 587733			1163 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant