rs30620577 SNP Detail

Summary

• ID
  rs30620577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153396163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGAAG CACCTCAAGA
  TACGACAGAG TGGATAAGGA CACAGCCAAA TGGACAGGGG ACATAAGAGA TTCTGGGAAA
  ACAGAACTTG GCTATTTCTC TATACTCAGA AATGTTCTGT AAGTTCTGTA TGTGCTCCAT
  ACATTCTAGA GTAATGTCCA GCAGCTCTGG GGACGATGAA TCCCTTCAGC TGCTTCTGCC
  R
  TAGCTCTTTA TAACCAGCAG CAAGGTCCTC GCCCTTCTCA GCTCAGCAGC AAGGTCCTAG
  CCCTTCTCAG CTCAGTTTAC TGCAGGCTTT GGTTTTCTTC AAGGAAACAT GATGCCCTTC
  TACTTGAAGA AGTCTCCAGT TACTCCTGAG CACAGGGAGG GAGCAGGGGG CTCCTCCTCC
  TTACTGTGAC TAGAAGGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47467261	NES10328625	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30620577					SNP	G	A	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467261	NES10328625	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153396163 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587732	regulatory region 587732			284 bp proximal
Rr587733	regulatory region 587733			817 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant