rs30618680 SNP Detail

Summary

• ID
  rs30618680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153364912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACCAGA AACTGGGCAT
  AAAAGCAGCT CACCAGGCTG GTGACTGATG GAGCCATCCT GACAGGAACC ACAAAGAGGC
  TCTTAAAGGG AGTCTGTAAG AAAGCGTTGG ATCAGTGGAG CTGTCAGACC TGAGACAACC
  CAGCCCAAAT GCAGTGTGCC ACACTGTCCT GCCACTGTAG CTGCACGGGT AGGTCACCCT
  Y
  TCACCATGCA GCACCTCACT CGTGAGAGCA AGCATCTCAG GCTAGCTCCA GCCCGCAGAC
  AGACCCTTGT TCTTTAGCCT CTTGCTGTGT CCCTCAGCAA ATGTCACTCA GCACACCAGA
  CAAGTCCTGG AGCTCCCTAT GACCGGGTCA GTTATAATAT GTGGACGACA CTTGCACAAG
  CCTGCCTGCT ACAGCCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45464740	mCV24207564	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47467642	NES10329134	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T	T	T	T	T	T
ss136110564	ENSMUSSNP6636467	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30618680					SNP	C	C	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467642	NES10329134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153364912 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			415 bp distal
Rr587720	regulatory region 587720			682 bp distal
Rr587721	regulatory region 587721			396 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant