rs30617760 SNP Detail

Summary

• ID
  rs30617760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55646697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACTGTG CTCTAGACAA
  AGTGGGAAAG TCTCGGTGAA GTCACTGATG ACCTAGTGGT GCTGCAGGCA CTGGAGGAAG
  TGAAGCTATC CGCCATCTCT GTACAGATCG TGACACACAT CAATGATGTG AGTAATATAA
  GTGTTCAGTC ACACAGACAT TGGATGGGAC CATCACTCTG CTACTACTGT CAGAGGCAGG
  R
  GTTTCTGCAA AGGAAATGTG GTAATAAAAT CAATTATCCT ATCCACACAT GGACAGACGG
  CCAGTAAATA AAATTAAACT GATTAAAGTT GTGTTCTCCA TTGATATGAC CAAGCCCCCT
  CTACAGCCCT GTTTTCTTCC CACACAAAGC TATTTCTATG TCTTACTTTG ACACCATGCC
  TATGTAGACT AGCTTCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46966282	NES10796127	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30617760					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966282	NES10796127	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55646697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576992	regulatory region 576992			1967 bp proximal
Tssr882	transcription start site region 882			1328 bp upstream