rs30616558 SNP Detail

Summary

• ID
  rs30616558
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55651127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTGGCC ATAACTTGTG
  TGTGCTCTCG TACAAACAAA TGGAATAAGG TGTGTCACAT ACAATTTAGC GTTTTTGCTG
  ACAAAACCAT TTCCATAGGG TAACTTCTGG TGCTGTCATC AAATCCCAAA GTGTCAAATA
  CAATGCTCTA AGCATATCTA TGTTGTGGAG ACCTTTTTAT TCTGATTATG AAAAATAGTT
  K
  CCAACTCACA TTTTCACTGC ATTTCAAAAG CCCACACTAA ACCAAGCATT AGTTAGTGAC
  ACTCTTGAAA TATCACCAGT ACAGACATGG AGTTGTCACC CAGTGACTGT CACTCACAAG
  CACTGTCAGC TCAGCCATGT GTTTGATCAT TTTCTACCTA TAAAGTGGGG GTAACCAAGT
  CAGCCTCAAA GGGCGGCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46966352	NES10796177	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30616558					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966352	NES10796177	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55651127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576992	regulatory region 576992			1709 bp distal
Rr576993	regulatory region 576993			776 bp distal