rs30616002 SNP Detail

Summary

• ID
  rs30616002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17720298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTCACC ATACAAGCGT
  GGGGTCAGAG TCTGATGGTT GTGGAGAAAA CTAACACTCC AAAGTTATCC TTTAGCTCTA
  CACATGTGCT GTGGCACGTG TGTGTCCTCT ACCTCAGCTT CCACCAACAG CAAATAAAAA
  CAAAATAAAA TTTAAACTCA GTGTAGTAAG TCATTAGGCA TGCCTCGTTC CTTCTCAGTC
  Y
  GGGGTCTGTA ACTCACGTGC CCTGGGCTGG ACTCTTGACT GGGCTCTGGT TTCAGTCTAC
  AGATGCAGCT GAGATTGGCT CCAGGTCCGC TCCTTGTCTC TCCAGGTCTG TTCTTTGTCT
  CTCCTCTCAG ATAATCAGGG CAAGTTCTTC TCATGGGAAG TGTCAGAAGG AAAAATAAAA
  ATAAAAGTAG GAAGTTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45947267	mCV23969007	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30616002					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17720298 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43533	predicted gene 43533			within coordinates
Rr626841	regulatory region 626841			within coordinates
Rr626842	regulatory region 626842			1062 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant