rs30615821 SNP Detail

Summary

• ID
  rs30615821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37780045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT AAATTGGAGA AAGAACAGGA
  R
  TCTGTGCTCA CCAGCCTCAT CCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45449150	mCV24773883	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss134812059	ENSMUSSNP5421772	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320712077	CHEV_3_37624818	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30615821					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37780045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13102	CpG island 13102	1229 bp distal
Gm5148	predicted gene 5148	1536 bp upstream
Gm36620	predicted gene, 36620	within coordinates
Rr575548	regulatory region 575548	1871 bp distal
Rr575549	regulatory region 575549	1578 bp distal
Rr575550	regulatory region 575550	916 bp distal
Rr575551	regulatory region 575551	728 bp proximal
Tssr33056	transcription start site region 33056	1558 bp upstream