rs30615605 SNP Detail

Summary

• ID
  rs30615605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55650519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGTTCA GCCCCAATCT
  AATCACATCA CCAGAAAATA ACTTTCATGC TTTCAGCTTG ACAGGATGGA CTTGAGGAAA
  AAAAACTAGG ATTGAAAACA ATGCTTTTGT TTCGATTACC CTCAGTTTTG CACAGTAATT
  AAAAGCGTCC ACTAACAGGC CCAATGAATG TTACTTTATA ATAATGCAAA AGAAAAAGCC
  R
  TACCATAGAA AAAGAAATAA ATTATCACAT GGAGAATGTG GGCACAGAAA AAAAGGAATT
  TCAAACCATC CTGGTCTCCT CCAATGCACC AGACACATCA CCTCAGAAAG TCAACTCTAT
  TTTCAGTTCA GTTTATTGAC ACTCAAATTG CATGTCTTCA AAACAAAGCT TTCAAGGCTG
  ATTTTATCCT CACAGATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46966338	NES10796170	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30615605					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966338	NES10796170	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55650519 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576992	regulatory region 576992			1101 bp distal
Rr576993	regulatory region 576993			168 bp distal