rs30614052 SNP Detail

Summary

• ID
  rs30614052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89319544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGTGA GTGGCAATGG
  ATGCGGCCAT CTTCCAGGAT GCTCTCAGTC TCCGTGAAGT CCTCAAAGGA GCAGTTGACA
  CCAGCTGAGA GGTCAGGCAC ATTCCAAGCC TGCAGCACGA GCTGGCCATG GCAGAAGGAA
  TGGGTAAGTG CTTACCTGCC CCACTTACCT CCCCCCCCAC CCCCAACTGC TCCCTCCCAG
  Y
  CATCTCCAAC AGCCACACTC ACCGGCACCT GGGACATGGT GACTGACACA TTGCGCGGCT
  GGACAGTTAA CTGCACACAC TGCAGCAGGT CAGAGGCAAA ACGCTGGGGC TCTTCTGCCC
  GCTCACAGGC ATCCTGCCTA GAGCAGCTGC AGGAAGAACA TGCCTAGGTT GGGTTTATAG
  GTCCAGAGTC TCCAGGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45946855	mCV24907651	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30614052					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89319544 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	1941 bp proximal