rs30612986 SNP Detail

Summary

• ID
  rs30612986
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119832503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTCCTAT AACTACTCTA GGACAAATTA CCCGTCACAG
  TTTTGTTTTG TTTTGTTTGC CTAGGCTTTT CCCTCACAAA ACTGCAAGTT TTCAATATTA
  W
  ATTCTCTTTT CTATGGGGAG GCACCCAGGG AGATCAGATC TCAAGCCAAC AATATGTCAT
  CAGATCTCCT GGATTACTAT TCATGAATAA AATCCCCCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45946461	mCV24679785	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss133593617	ENSMUSSNP6434478	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss321929504	CHEV_6_119805560	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30612986					SNP	A	A	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119832503 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	390 bp downstream
Rr637739	regulatory region 637739	938 bp distal
Rr637740	regulatory region 637740	2 bp proximal