rs30612739 SNP Detail

Summary

• ID
  rs30612739
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82959218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTACCAG ACTTGAGCAA GTCCAACTCA ACAGGCCGTG
  TTTTGTGCCC ACTAAACTAT GGTGCCCAAT GGAATGCATG TGCGAGCTAT AGAATTTTAC
  S
  TGTACTTTCT GTTTGCTGTT GCTGCTGTTT GGGACTAGCT CATCTATGGT TATTACAGTG
  TCTCTGGTAG GCACCCTCAT TTTTGCTTAT TCATTTCTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45448550	mCV23186910	ABI	CRAMUS_MOUSE	f	SNP		G	C					G		C
ss50989870	NES13925201	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	G	G		C	G	G	C		C
ss135410424	ENSMUSSNP4286593	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C
ss320820904	CHEV_3_82855833	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30612739					SNP	G	G	C	C	C	C	C	G	C	C	G	G	C	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50989870	NES13925201	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82959218 () rs orientation: forward

Symbol	Name	Function Class
Rr375252	regulatory region 375252	1529 bp downstream
Rr578825	regulatory region 578825	1853 bp distal
Rr578826	regulatory region 578826	1587 bp proximal
Rr578827	regulatory region 578827	1986 bp proximal