rs30612083 SNP Detail

Summary

• ID
  rs30612083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTCAGCTG GGGCGTAGAG GGGCTGGGCT GGGCTGGGGA
  GGCTGCTGAC GCTGCTGCCT GCCTGGGTTG GACTCTGGCC ACTCTAAGGC GCTTAGGCCG
  M
  TGATAATAGC TCTGGGAGAT TACAGGTTTT GGTAGATGAG GTATGGGTCC CTGGGAGGGC
  CCCAAACACA GCTAGCGATT TCAGGGACAG AGTCCTCTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44946432	mCV23003501	ABI	CRAMUS_MOUSE	f	SNP	C	C	C							A
ss49751643	NES13027889	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	A	C		C	A	C	A	C	C	A	C	C
ss120011487	PARCsnp_1.19822	PARC_SEQ	INBRED	f	SNP								C		A
ss120014491	PARCsnp_1.09860	PARC_SEQ	INBRED	f	SNP								C		A
ss146193533	ENSMUSSNP6302321	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30612083					SNP	C	C	C	C	C	A	C	C	C	A	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751643	NES13027889	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316603 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1477 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			within coordinates
Rr423588	regulatory region 423588			651 bp proximal
Rr423589	regulatory region 423589			1531 bp proximal
Rr423590	regulatory region 423590			1710 bp proximal