rs30610944 SNP Detail

Summary

• ID
  rs30610944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCGGGCC GGGGCGGGCC
  GGGCGGTCCT GGCGGTCCTC GCGCAGCCCG TGCCAAGCGC GCGGCACCCG ATGGCGCTGG
  GGACCCAGCG CCCGCCTGTG CTCGGAGCGC AGTGCCGCGG GACGCGGGGA GAGGGCGCTG
  CCTCCTCCCG CCCGCGAGCT GTTTTCATTC ATAACTTTAT CCGGCCGGAC CTGCCGCGGC
  W
  CGGTGCCCCT GAGGTCTCGG CGTGGGGCCC AAGCGCCCGA CGGTGCTACC CACACTGCTG
  TCCGCGGGTG CGCACCGGCT TCGCTCTGGA CAGTTGCGGG GTGCCTAGGT GCTCCGCCTG
  AGCGAACTTG CTTGGGAATG CCCTGTAAAA TGCAAATTAA AGCCGTGCCT AGGGGTTTCA
  TAACTCAAAC AAGCCGTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45448132	mCV25185816	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss134809981	ENSMUSSNP4065386	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30610944					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	within coordinates
Gm42922	predicted gene 42922	Coding-NonSynonymous
Rr575523	regulatory region 575523	935 bp distal
Rr575524	regulatory region 575524	within coordinates
Rr575525	regulatory region 575525	228 bp distal
Rr575526	regulatory region 575526	120 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28908	transcription start site region 28908	1332 bp downstream
Tssr28909	transcription start site region 28909	1113 bp downstream
Tssr28910	transcription start site region 28910	1082 bp downstream
Tssr28911	transcription start site region 28911	1061 bp downstream
Tssr28912	transcription start site region 28912	1039 bp downstream