rs30610001 SNP Detail

Summary

• ID
  rs30610001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18435734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATTTGG GTTAGCGAAA
  GTGCCACAGT TTGTTATGAT TTTTTTAAAA GTAATATTTA AAGACCCATT AAAATGAGAA
  GATTGACAAA GGGTTTTCTG CAAAATATCC ACATTAAGAA AAAAAAAGGG AATTGTTTTA
  ATCTATTAAA TGTAACTACA GTGCAGGAAA ACAGTAATAG GGTGTTTCAA GTCACAGCAC
  R
  GAGTTGAAAA AGAACTGTTT GGATGAGTAC AGATCAGTGA GAGAACTGGT GCTATTTAAG
  AAAGGTTCAA TGGCTGCAAA TTATTAGCTG ATCTCTGAGG CACACAATCA GGTTTTAAAT
  CTCAAGCCGC ATAGTTGCTA ATGGTACTAA ATTGCTAAAT TACTTAACCT CTTTGAGAAT
  CCTCTGATAG GCTAGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss45946534	mCV23958668	ABI	CRAMUS_MOUSE	f	SNP	G	G		A		A
ss51250479	NES13802227	PERLEGEN	MM_PANEL2	f	SNP			A		G		G	A
ss133034795	ENSMUSSNP4031709	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs30610001					SNP	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250479	NES13802227	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18435734 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			within coordinates
Rr626922	regulatory region 626922			688 bp distal
Rr626923	regulatory region 626923			972 bp distal
Rr626924	regulatory region 626924			774 bp proximal