rs30608997 SNP Detail

Summary

• ID
  rs30608997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52197220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGATGG TGGGCTTCAG
  CTATTGGGCT TGGAGACTAT GTCCCCCGAC TTAGTGAAAG GCGCCTGACT TGGACGCGGC
  CACCAATTCC TACCCGAAGC GAATAAATAA GCCCAGTTCC TTGCCGGGTC TTGTCCGGAC
  GAAGACAGCG ACAGGCTGTG AAAAACCTCT CAGCAGCGAA GACCAGAGAG CAGCCTGCCC
  Y
  GCCGCCAGTC GGCCAAGGGC AAGGGAGGCT GCTGGCCTAG TCATTTCACC AGGCCTCTGA
  GCTCCTGGAG GCCTGCACCT ACCTAGGGCC TCTGTGATCC GTGGAGGGAA GCGGCTGCTG
  CCAACCAGTG ACTTCCATTG TTAGAAAACT GGAGCATTCT ATTTGTGCCC ACTGCTCAGC
  AGTAACATAA ATATAGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45947291	mCV22669440	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss133191083	ENSMUSSNP1991237	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30608997					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52197220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17429	CpG island 17429	1050 bp proximal
Hoxa7	homeobox A7	Intron
Rr630374	regulatory region 630374	1039 bp distal
Rr630375	regulatory region 630375	1564 bp proximal
Rr630376	regulatory region 630376	1928 bp proximal
Tssr61004	transcription start site region 61004	1524 bp upstream
Tssr61005	transcription start site region 61005	1333 bp downstream