rs30608990 SNP Detail

Summary

• ID
  rs30608990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107509487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTTGCAG TCCTAACCCC TGACAAGCCA GCACCAGAAA
  CTCTTCTTTT GTCAGTCCTA AACACTGTTG AAGGGAAAAA GAAGTGTATT CACTGAACAG
  Y
  GTTTGCCCCT GTGTTCCATA TAGTCACCAA AGGAGACATT AAACTATTAC AGAAAGACCA
  TATTACTTTG AGGGGCTTGG TTGGGAATAG GAGTGGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45947093	mCV23133283	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss51827549	NES14777346	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30608990					SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51827549	NES14777346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107509487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17807	CpG island 17807	1159 bp distal
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636001	regulatory region 636001	537 bp distal
Rr636003	regulatory region 636003	1971 bp proximal