rs30608940 SNP Detail

Summary

• ID
  rs30608940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17595589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAACTAGG ACTCAAACAG AAGTACTTCA CCAAGAACCC
  AGGCTTTCAA TCAATGTACA AGTAGGAAAC ACTGAACCCT TTCCTTCTTT ATTAAGAAAC
  K
  TGTCCCAAAA ATGAAACATA TGCCATCCAT TTCCCTATTT TGAGTGATAA TTGAAGTGTT
  AGATGTTACA GCATTACTAT ACTATATTCT TATACAAAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45944945	mCV23973117	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		T
ss47813992	NES11717781	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		T	T	G	G		T	T	G	T		G
ss133018340	ENSMUSSNP2697624	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							T
ss321755713	CHEV_6_17545590	CHEVERUD	SCREENING_POP	f	SNP													G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30608940					SNP	T	T	G	G	G	G	G	G	T	T	G	G	G	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47813992	NES11717781	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17595589 () rs orientation: forward

Symbol	Name	Function Class
Gm53318	predicted gene, 53318	within coordinates
Rr626818	regulatory region 626818	96 bp proximal