rs30607868 SNP Detail

Summary

• ID
  rs30607868
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58426177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA GGATAAATAT CACACTGTTG
  M
  TGTATCTCCA AATGTCAAGC CTATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45447744	mCV24915823	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					A
ss46981057	NES10792896	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		C	C	A		C	A	C		C
ss135207029	ENSMUSSNP1417306	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss320783117	CHEV_3_58322678	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30607868					SNP	A	A	C	C	C	C	C	A	C	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981057	NES10792896	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58426177 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	within coordinates
Rr397679	regulatory region 397679	1898 bp downstream
Rr397680	regulatory region 397680	1198 bp downstream
Rr577245	regulatory region 577245	746 bp distal
Rr577246	regulatory region 577246	568 bp distal
Tssr29205	transcription start site region 29205	1255 bp downstream
Tssr29206	transcription start site region 29206	1210 bp downstream