rs30607284 SNP Detail

Summary

• ID
  rs30607284
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42111320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGG ACAGAAGCCA TTCCTTTCTG
  R
  TTTTGCCAAG TTGACCCTCT TCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss44945140	mCV24954858	ABI	CRAMUS_MOUSE	f	SNP		G				A	G
ss50819837	NES13535560	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	G			G		G	G		G
ss146410871	ENSMUSSNP3807241	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325811623	CHEV_19_42197371	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30607284					SNP	A	G	G	A	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819837	NES13535560	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42111320 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	394 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	794 bp downstream
Rr547822	regulatory region 547822	334 bp distal