rs30607232 SNP Detail

Summary

• ID
  rs30607232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGA GTTTAAGTTT TGCAAACACC
  Y
  GTCTGGGAAC AGTTCCAAAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47465095	NES10334915	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C	T	C		T	C	C
ss136115289	ENSMUSSNP7099781	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C
ss321031900	CHEV_3_153606174	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30607232					SNP	T	C	T	C	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465095	NES10334915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648847 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	770 bp proximal
Rr587801	regulatory region 587801	within coordinates
Rr587802	regulatory region 587802	1412 bp proximal
Tssr32439	transcription start site region 32439	1641 bp upstream
Tssr36252	transcription start site region 36252	1215 bp downstream
Tssr36253	transcription start site region 36253	1251 bp downstream
Tssr36254	transcription start site region 36254	1422 bp downstream