rs30607125 SNP Detail

Summary

• ID
  rs30607125
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153591710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATAAGCC AGTTGGACAG
  AGATGCAGCC AGATGAAGGA ACTAGCGTAG ACAGGCACGG AGTACTGCCT GGGTGTTATA
  GCCCTCCCTT TACTGCTTCT AGGTAAACAG AAGGACAGAA AAAGTGGTGT GCACACTGCA
  TTTAGTGCAG GAAGTTTACA ACATTTAAAA GCTGGAGCTT ATTTCGCAGT GAAATAACTT
  M
  AAATTTTGGC ACTTGGGATT TACACTAATG CTAGATAAAC AGCTAACGGG ATATTGCTGT
  GAACAATAAA GGAAAAGCTA AAGGTTAAAA GTATCCTCTT CTGGGGCTGG TGAGATGGCT
  CAGTGGGTAA GAGCACCCGA CTGCTCTTCC AAAGGTCAGG AGTTCAAATC CCAGCAACCA
  CATGGTGGCT CACAACCATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47465386	NES10335786	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30607125					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465386	NES10335786	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153591710 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	Intron
Rr587785	regulatory region 587785	212 bp proximal
Rr587786	regulatory region 587786	422 bp proximal