rs30606403 SNP Detail

Summary

• ID
  rs30606403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153649770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT TCCTGGGGTG GGACTACAGT
  Y
  AAAGTTTTTT GGAAGTGATC GCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45548106	mCV23501567	ABI	CRAMUS_MOUSE	f	SNP	T	C					C	C
ss47465086	NES10334918	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C		C		C	C
ss136115298	ENSMUSSNP2933052	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321031906	CHEV_3_153607097	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30606403					SNP	T	C	T	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465086	NES10334918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153649770 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	within coordinates
Rr587801	regulatory region 587801	within coordinates
Rr587802	regulatory region 587802	489 bp proximal
Tssr32439	transcription start site region 32439	718 bp upstream
Tssr36252	transcription start site region 36252	292 bp downstream
Tssr36253	transcription start site region 36253	328 bp downstream
Tssr36254	transcription start site region 36254	499 bp downstream