rs30606400 SNP Detail

Summary

• ID
  rs30606400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153649846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTTCCTGG GGTGGGACTA CAGTCAAAGT TTTTTGGAAG
  TGATCGCCTC TGCCACAGCA GGGTTCTGAC ACCGGGTTCC CTTCAAGAAG CGTGGGTGAC
  Y
  GGAGAGAAGT GGCTGAGCCC ATTGACCCAG AATGAAGCAG GTCCGCAGGG CCACGCCTGC
  AGGGGTCAGA GCCCGGAGAT CAGTGAGGGA GGGCGGCAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47465083	NES10334919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30606400					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465083	NES10334919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153649846 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	within coordinates
Rr587801	regulatory region 587801	within coordinates
Rr587802	regulatory region 587802	413 bp proximal
Tssr32439	transcription start site region 32439	642 bp upstream
Tssr36252	transcription start site region 36252	216 bp downstream
Tssr36253	transcription start site region 36253	252 bp downstream
Tssr36254	transcription start site region 36254	423 bp downstream