rs30606279 SNP Detail

Summary

• ID
  rs30606279
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153592447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATTTGC ACCTTCAGTG
  ACCTAGCTTT CAGAAACTTA AACAAAAACT TAAATAAACT GAGTGCATTT TAATTTAAAA
  TTAGTTAAGG TAGGCATAGT GGCATGTCCT ATAATCCTAG CAGTTGGGAG ATGCAGGCAG
  GAAGGTCTGA GTTTCAAGAC CAACCTGGGC TACATTGAGC CTCTAAGTAA ATAATCAAAT
  S
  TGCTCACCTG ACTGGAGTCC AAAGAAGAGC TCCTCGTCCT GCAGCAGCTC CTGGACACAG
  TCCAGCCGCA TGCTGATCGT CTCCACATCA ACCAGAGGCT CCAGGATGTT GGAGCGCAGC
  CTTCGGCTCC CTCCCGCAGT CTTGGTGTAA TTTAAAACAC CGAAGAGAGT GTGATTACTC
  CTTCCAAAAG ATAAGGTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47465380	NES10335775	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30606279					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465380	NES10335775	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153592447 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Msh4	mutS homolog 4			Intron
				Splice-Site
Rr587785	regulatory region 587785			504 bp distal
Rr587786	regulatory region 587786			294 bp distal
Rr587787	regulatory region 587787			1326 bp proximal