rs30605839 SNP Detail

Summary

• ID
  rs30605839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152059611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAATA TTCAACATGA
  ACATGCTGAG CTACCAGGGA GATGACACTT AAAACTGCCT TTAGATTGCT AACAGTCAGA
  GTGCCTGTCA TCAACAACAC AGGGAACCAT TGCTGGGAAG AATGTGGAGA GAGGGACACT
  GCCAGTGGGG ATGTAAACTG GCGTAGCCAC TGGGGCAATG GGTATGGACG CTCTTCAGCC
  R
  TCTGTCAGAC AGAGTGTGCA GCTGCTGCAC TCGCGGGTCT GCACCTAAGG GAGTCTAAGT
  CATGCAGGGA CTTGCTCTCT GTGATTCCTG CTGTCCTACT CACAGATGTC AGTATGGAAC
  CACCCTCCAT GCCCATCAAC AAATAAAGAA AATGTGGCGT ATATATGCAA TGGGGTTTTG
  TTCATCTGTA AAAAAAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45446657	mCV25024484	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss136102671	ENSMUSSNP114118	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321028740	CHEV_3_152016938	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30605839					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152059611 () rs orientation: forward

Symbol	Name	Function Class
Rr587537	regulatory region 587537	967 bp distal
Rr587538	regulatory region 587538	1267 bp proximal
Usp33	ubiquitin specific peptidase 33	Intron