rs30605633 SNP Detail

Summary

• ID
  rs30605633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172461578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT TGCATGTGTA TCTGTGTGAA
  R
  GTGTCAGGAC TCCCGGAGCT GGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44945790	mCV27569179	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss120013341	PARCsnp_1.20749	PARC_SEQ	INBRED	f	SNP			G	A
ss120015560	PARCsnp_1.10929	PARC_SEQ	INBRED	f	SNP			G	A
ss146197896	ENSMUSSNP3079437	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320126705	CHEV_1_174564142	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30605633					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172461578 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	1074 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	817 bp downstream
Rr423641	regulatory region 423641	1373 bp distal
Rr423642	regulatory region 423642	1232 bp distal
Rr423643	regulatory region 423643	955 bp distal
Rr423644	regulatory region 423644	106 bp distal
Rr423645	regulatory region 423645	185 bp distal
Tssr10245	transcription start site region 10245	936 bp downstream
Tssr15247	transcription start site region 15247	1202 bp upstream
Tssr15248	transcription start site region 15248	1142 bp upstream
Tssr15249	transcription start site region 15249	1068 bp upstream