rs30605363 SNP Detail

Summary

• ID
  rs30605363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65391497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC AACTCACTTC ATAGCAGCCA
  Y
  TCCACGTGCA TCTGCAGAAG CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45447228	mCV24620082	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss50966916	NES13932926	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	T	T	T	T	T	T	T
ss135251731	ENSMUSSNP4789494	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30605363					SNP	C	C	T	C	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966916	NES13932926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65391497 () rs orientation: forward

Symbol	Name	Function Class
Rr375119	regulatory region 375119	within coordinates
Rr577683	regulatory region 577683	1474 bp distal
Rr577684	regulatory region 577684	682 bp distal
Rr577685	regulatory region 577685	244 bp proximal
Rr577686	regulatory region 577686	292 bp proximal
Rr577687	regulatory region 577687	420 bp proximal