rs30605244 SNP Detail

Summary

• ID
  rs30605244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72972652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTAAGA ATTTCTATTT
  CCCAAAAGAG CCTTGCGGAG TACAGAAGTT AACGATGATT CATAATTTTC AAGAAAAATA
  CACTATCTCT ATAGACAAAT TTCTTGTTAA GTAGCTTCAA TGCAAAAATG TAAAGGAAAA
  AAAGTACTCC TAAATTTTGA TCTATGGTGG AATCTACCTG ATAGGATCCT CAAAGAATGA
  Y
  TGATCCACTC TGCAGGCAAT AGAGAAATAT GCAGTAATCA GATTTCTACT AGACATTACA
  GTGGAAAAAC TTCTAAATAT TTGATTTACA TAACAGTGCT TAAAACTTGA TATTCTTTAC
  TGGAAGAGCC TTTAAAGGGA CACTGGAGAT AATTGAAGAC ACCACTGTTG GAATTTGGAA
  ATCTTATTAC CCCTGGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	PWD/PhJ
ss45445680	mCV24617947	ABI	CRAMUS_MOUSE	f	SNP	C	T		C		C
ss50986102	NES13919806	PERLEGEN	MM_PANEL2	f	SNP		T	C		T		T
ss135306254	ENSMUSSNP3778777	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	PWD/PhJ
rs30605244					SNP	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50986102	NES13919806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72972652 () rs orientation: forward

Symbol	Name	Function Class
Gm20754	predicted gene, 20754	1032 bp upstream
Gm38353	predicted gene, 38353	647 bp upstream
Rr578299	regulatory region 578299	562 bp proximal
Rr578300	regulatory region 578300	955 bp proximal
Rr578301	regulatory region 578301	1043 bp proximal
Tssr29555	transcription start site region 29555	977 bp upstream
Tssr29556	transcription start site region 29556	1013 bp upstream
Tssr29557	transcription start site region 29557	1026 bp upstream