rs30603627 SNP Detail

Summary

• ID
  rs30603627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101205050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTTAGC CTCTGGAGGC
  CACAGCACCC CTTCTACTAC GCCGGTGTTC TACAGAGTCA CAGAGCACAA GTCGGAGAAA
  AGAGGGATTG GCATCTTTCT TGATGGGAAT CATGTCAGAG AGGCAGCCCT GGGTGCCACA
  GGACTTGCAG CTGTGTGCCC TCCAGACCTC CATTCTACCC AAACCTCAGC CAGAGCCCTG
  R
  GCATCTTTGA AAGTCTGTTC ACTTCCACCT CCTGCAAAGT TAGTACTTCA GCCAAGTGGC
  TCCCGATCAT GTGCTCACAC ACCTGAAACG TCAGGTCTGG ACGGTGGGCA CAGAGAGCAG
  CAACGGACGA CTGGGTGGCT CTCTGAAGAC ATGAGAACAT TCAAAGCCCT GACAAAGTCT
  GTGACCTGGA CCTAGCCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45447788	mCV22287099	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss46813253	NES10715100	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		G	G	G	G	G	G	G	G
ss135546283	ENSMUSSNP1780606	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30603627					SNP	G	G	A	G	A	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813253	NES10715100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101205050 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	1126 bp upstream
Gm65445	predicted gene, 65445	within coordinates
Rr397890	regulatory region 397890	1832 bp downstream
Rr581999	regulatory region 581999	1752 bp distal
Rr582001	regulatory region 582001	957 bp distal
Rr582002	regulatory region 582002	238 bp distal
Tssr30898	transcription start site region 30898	228 bp downstream
Tssr30899	transcription start site region 30899	198 bp downstream
Tssr34786	transcription start site region 34786	1168 bp upstream