rs30603461 SNP Detail

Summary

• ID
  rs30603461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106695478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCTTTG ATACACCCAG CACTTGTCTG TTGAGTAAAC
  TTGCCATATA CTTTCAGTTG CCTAGTAGGA AAAAGGGCTT GGTGCTTCCT GTGACCATGT
  R
  ATTAGTCTCT CTTGCTTAAT TTCATTTCTA CCATGCCTGT GGCAGGAAGT GGGGGAGTAA
  TACTTCTTTG AGTACATATG TAGTGCCTTG TAACTGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45446537	mCV23492347	ABI	CRAMUS_MOUSE	f	SNP	G	G						G		A
ss46848958	NES10709617	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G	A	G	G	G	G
ss135580363	ENSMUSSNP5225101	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30603461					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848958	NES10709617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106695478 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	Intron
Rr397926	regulatory region 397926	1635 bp upstream
Rr582867	regulatory region 582867	within coordinates
Rr582868	regulatory region 582868	1664 bp proximal
Rr582869	regulatory region 582869	1977 bp proximal
Tssr1002	transcription start site region 1002	135 bp upstream
Tssr1003	transcription start site region 1003	370 bp upstream
Tssr31142	transcription start site region 31142	99 bp upstream
Tssr31143	transcription start site region 31143	597 bp upstream
Tssr31144	transcription start site region 31144	637 bp upstream
Tssr31145	transcription start site region 31145	696 bp upstream
Tssr34999	transcription start site region 34999	44 bp upstream
Tssr35000	transcription start site region 35000	406 bp downstream
Tssr35001	transcription start site region 35001	1841 bp downstream
Tssr35002	transcription start site region 35002	1872 bp downstream
Tssr35003	transcription start site region 35003	1885 bp downstream
Tssr35004	transcription start site region 35004	1911 bp downstream
Tssr35005	transcription start site region 35005	1967 bp downstream
Tssr35006	transcription start site region 35006	1981 bp downstream