rs30603452 SNP Detail

Summary

• ID
  rs30603452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:20986503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGTCCT GGGTCCCGGG
  TTATAAGAAA GCAGGCTGAG CAAGCCAGGA GGATCAAGCC TTACAGTGGT ACCCCTCCAT
  GGCCTCTGCA TCAGCTCCTG CCTCCAGGAG CCTGCCCTGT TTGAGTTCCT GTCCTCACTG
  CCTTTGGTGA TGAACGGCAA TGTGGAAAGT GTAAGATGAA TAAACCCTTT CCTCCCAGAA
  Y
  TGCTTTTTGG CCCTAGTATT CCATTGCAGC AATAGAAACC CTAACTAAGA AAGGAGCGAA
  AGAGTAAAAG TCCAGTGAAT TCAGCAGACA CTCTGGGTTC TCACTGGAGA GGAAAAAGAA
  TTTAATCCCA TGTAACACAG TATTTATCTC TAAGAAATCA CAGCCTCATG TGGGTGTAGA
  AGAAACACCC AGATAAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss44945107	mCV24135291	ABI	CRAMUS_MOUSE	f	SNP	C		T	T
ss148726328	ENSMUSSNP4905752	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
ss319654640	CHEV_1_20906360	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30603452					SNP	C	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20986503 () rs orientation: forward

Symbol	Name	Function Class
Gm24171	predicted gene, 24171	739 bp upstream
Paqr8	progestin and adipoQ receptor family member VIII	Intron
Tssr6058	transcription start site region 6058	1561 bp upstream
Tssr6059	transcription start site region 6059	1577 bp upstream