rs30602996 SNP Detail

Summary

• ID
  rs30602996
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53771604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCACAGGCT ACAGAAGGCC GATAGCCCAC AGTTAGACAT TTCATTCTGA GTGTGTCTGT
  ATCAAGTTGA AGTGTAAATG GTAGAGAGAG GATATGTTTC TACTTTTGGT AGTTCACTGA
  CACATTTTTA GTCAGGCAAT ATAAGGGATG TCAAACAGAG CGGCCGCTAG GTCCCCACTG
  GCTGGTTACG GCGGAAGTAG GGACTGAGTC GAAGCCGGAC GTGGCGGCGG AACTGGGGCC
  GGGACTCAAG GTCCGGGCGG ATGAGGAAGC GTTGCGGAGT TGCTAAGCAA CCTAGCAGCC
  S
  GCACAGATAG ATACTAGAGA AGCTGGACTC AGTTGCTTTA ACTAACAACG TTCTTTGATC
  TTTCTAGCAT TTCTGATAAT ACGATTTCCA TCCGTATTAA CCTTATAGTT TTCTTCACAT
  ACTTCACACT TCACTACAGA CTTTTTAATA ATTTCAAAAG AAAGTTATCA CGATAGAATT
  ATGCTGAGAT TCCTGTTAGG GCCCAGAAGA AAAAATTGTA TCCTAGCACT AGCAGGTTTT
  GGAGGGAAAA AAAAATCATT ACTATATCCC GTTGTTCTTG ATGTGTCCAA ATAGACTTTA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45445282	mCV24469599	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30602996					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53771604 () rs orientation: forward

Symbol	Name	Function Class
Rr367439	regulatory region 367439	within coordinates
Rr576756	regulatory region 576756	428 bp distal
Rr576757	regulatory region 576757	within coordinates
Tssr33277	transcription start site region 33277	353 bp upstream
Ufm1	ubiquitin-fold modifier 1	376 bp upstream