rs30602891 SNP Detail

Summary

• ID
  rs30602891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27172313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACATTTA AAAATAACAG
  CGTCAATCAC ATAAATGTAT AGGCAACTAA TCTGAAGATT AGCCATGCCA GTTACTATGC
  AATAAAAGCA AGAGACTGAC GAAAAAGCAC ACATGTAATT ATGTAGCCAG ATGCTCATGT
  CCATATTAGG AAAGTTCACA ATCAGAAAAG CAGGCCTAGG GATAGAGAGC GCAGAGAGAC
  Y
  CCAGAGCATG AAAGGACAAG ACCACGAGGG ACAGCAACAG AGGTCTAGAA TAACAGTCCC
  AGCCCCACAG GGGAACAGTT GTTCTGGGGC AGGAGTCTAG GGCTCAAAAT GGTGTTAATT
  TTAGTTTAAG TTAAAAAATT TGAAATCTCT CCTAGTAACA GAACACACAA GAAGTGTGAG
  ATCGGTCCTG TCCTCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45446702	mCV24689246	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss134702182	ENSMUSSNP2569013	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30602891					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27172313 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574348	regulatory region 574348	257 bp proximal