rs30602804 SNP Detail

Summary

• ID
  rs30602804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69034867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATTCACT TTGGAAGGCA AAGAGGTGTG TCTAAGCTAC
  ATGTGAAGTC CTAAACCCTG AGTCCTGTTC TGGGAACTGC GAACCAACCT AGGACCCGGC
  R
  TCGTGGCTAG GACTGACTAC GGTGATGTGC ATTCTGAAAA CTGAAGGGAA AGCTAGAGGG
  ACCCGGTAGG AAAAGGAAGG TAGAAGGTTC GCAACAGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45444776	mCV24615972	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss135265164	ENSMUSSNP6246123	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320791959	CHEV_3_68931456	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30602804					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69034867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	within coordinates
Kpna4	karyopherin subunit alpha 4	442 bp upstream
Rr397714	regulatory region 397714	223 bp downstream
Rr578129	regulatory region 578129	1559 bp distal
Rr578130	regulatory region 578130	1478 bp distal
Rr578131	regulatory region 578131	1330 bp distal
Rr578132	regulatory region 578132	within coordinates
Tssr902	transcription start site region 902	500 bp upstream
Tssr33537	transcription start site region 33537	649 bp upstream
Tssr33538	transcription start site region 33538	474 bp upstream
Tssr33539	transcription start site region 33539	449 bp upstream
Tssr33540	transcription start site region 33540	425 bp upstream