rs30602782 SNP Detail

Summary

• ID
  rs30602782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57377357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTGACT GCTCTTCCGA
  AGGTCCTGAG TTCAAATCCC AGCAACCACA TGGTGGCTCA CAATCATCTG TAATGAGATC
  TGACGCCCTC TTCTGGGGTG TCTGAACACA GCTATAGTGT ACTTACATAT AATAAATAAA
  TAAATCTTTA AAAATTTTAA TTTAAAAAAT GCTATTTATT TATTTTTACA TGTATGGGTT
  R
  GGGGGGTTGT TTGTTTGCCT GCAGGTATGT TTGTTCACCA AATGTGTGCA GTGCCTAAGC
  TATTCAAAAA AGAAGATGGG GGACCCCCTT GGAACTAGCA TAAGAGCTGG TTTTAAACTA
  CCATGTGAGT ACTGAGGTCT GAACTCTGGG TCTTTGGACA AGCAGTCAGT GCTCTTAAAC
  ATCTCTGCAG CCCCTTGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45445483	mCV22290772	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss135201507	ENSMUSSNP3437294	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30602782					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57377357 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	185 bp proximal
Rr375020	regulatory region 375020	142 bp upstream
Rr577104	regulatory region 577104	193 bp proximal
Rr577105	regulatory region 577105	273 bp proximal
Rr577106	regulatory region 577106	444 bp proximal
Wwtr1	WW domain containing transcription regulator 1	Intron