rs30602229 SNP Detail

Summary

• ID
  rs30602229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153601600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCTGAG GAGGAGTGTA
  AACTAGAGTA AGCTAAAATC ATTCCCCCAC ATAGATGAAA TTATGTAGAG GAAAAAGCAC
  TTGCCAACAG CTGCCACCCC TAAGACCAGG AGAGCTTCAG TTTTGGCCAG CCTGATAGCA
  TTGTCACTTC CAAAGAAACA GGACTTTCTC TAAGGATCCG GACTTGACTT TTGTATATTC
  Y
  GAAAACCTGC GATGTTTGCC ACAACCTAGA ATCATCTGGG AAGAGAGCTC AATTGAAGAA
  CTGACTTTAT TAGGTTGGTC TGTGGACATG TCTCCAGGGA AACTGTCTTG ATTGCTAATT
  AATGAGGAAT CCAAGCCCAT TATGAGTGAC ACCATTGCCT AGGCAGGGAG CCTGAACTAC
  ATAAGGCAGG AGAAAGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47465284	NES10335721	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30602229					SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465284	NES10335721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153601600 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	Intron
Rr587788	regulatory region 587788	165 bp distal