rs30601865 SNP Detail

Summary

• ID
  rs30601865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126419152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGATGAC TCGGCCTTTT CTCTTTCTGT
  GAGAACACAC CAAGCAATGA CTCCCATCCC CACAGTTCTG CTTTTAGACT TGTAACTAAG
  ATTTCAATAG ATGAAGTAGC AATTTCCAAT AGTTTTAGCA TTGGTGTTAT AATTCGCGCA
  Y
  GTGTCTAGCA CGTTGACTTT TCATTTGAAA AACTGGAGCA TATAGAAAAC AAACTCAGCT
  GAAGAAGGCA GGAAAGGGGC TCAGTTTAGC CATTGAAGGG GATTTGTATT TGCTGAGAAT
  GGGCTTTTAG GTTGAACCAG CCTCTAGTTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45445462	mCV23466466	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss135837360	ENSMUSSNP4926947	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss320946786	CHEV_3_126328421	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30601865					SNP	T	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126419152 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			377 bp upstream
Gm64675	predicted gene, 64675			1988 bp upstream
Rr584659	regulatory region 584659			within coordinates